PUBLICATIONS


Project Newsletters Project newsletter, Jan 2020 view View Master first newsletter    
Promotional materials Project flyer, Jan 2019 view View Master first newsletter Project infographic, Apr 2020 view View Master first newsletter
Master Tech FlyerWP2a view View Master first newsletter Master Tech FlyerWP2b view View Master first newsletter
Master Tech FlyerWP3 view View Master first newsletter Master Tech FlyerWP4 view View Master first newsletter
Master Tech FlyerWP4Food view View Master first newsletter Master Tech FlyerWP5 view View Master first newsletter
Project publication, May 2020 view View Master first newsletter    
Master in the media Horizon article, Aug 2019 view View Master first newsletter    
Scientific articles 2019

Manara, S., Asnicar, F., Beghini, F., Bazzani, D., Cumbo, F., Zolfo, M., Nigro, E., Karcher, N., Manghi, P., Metzger, M.I., Pasolli, E. and Segata, N. (2019) Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species. Genome Biology, 20, 299.

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Slattery, C., Cotter, P.D. and O'Toole, P.W. (2019) Analysis of health benefits conferred by Lactobacillus species from kefir. Nutrients, 11.

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Tett, A., Huang, K.D., Asnicar, F., Fehlner-Peach, H., Pasolli, E., Karcher, N., Armanini, F., Manghi, P., Bonham, K., Zolfo, M., De Filippis, F., et al. (2019) The Prevotella copri complex comprises four distinct clades underrepresented in westernized populations. Cell Host Microbe, 26(5), 666-679.e7.

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Thomas, A.M. and Segata, N. (2019) Multiple levels of the unknown in microbiome research. BMC Biology, 17, 48.

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Wuyts, S. and Segata, N. (2019) At the forefront of the sequencing revolution-notes from the RNGS19 conference. Genome Biology, 20, 93.

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Zolfo, M., Pinto, F., Asnicar, F., Manghi, P., Tett, A., Bushman, F.D. and Segata, N. (2019) Detecting contamination in viromes using ViromeQC. Nature Biotechnology, 37, 1408-1412.

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Scientific articles 2020

Asnicar, F., Thomas, A.M., Beghini, F., Mengoni, C., Manara, S., Manghi, P., Zhu, Q., Bolzan, M., Cumbo, F., May, U., et al. (2020) Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0. Nature Communications, 11, 2500.

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Begrem, S., Ivaniuk, F., Gigout-Chevalier, F., Kolypczuk, L., Bonnetot, S., Leroi, F., Grovel, O., Delbarre-Ladrat, C., Passerini, D. (2020) New insight into antimicrobial compounds from food and marine-sourced Carnobacterium species through phenotype and genome analyses. Microorganisms, 8(7):1093.

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De Filippis, F., Pasolli, E. and Ercolini, D. (2020) The food-gut axis: lactic acid bacteria and their link to food, the gut microbiome and human health. FEMS Microbiology Reviews, 44(4), 454–489.

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De Filippis, F., Pasolli, E. and Ercolini, D. (2020) Newly explored 
Faecalibacterium diversity is connected to age, lifestyle, geography, and disease
. Current Biology, 30, 1–12.

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Karcher, N., Pasolli, E., Asnicar, F., Huang, K.D., Tett, A., Manara, S., Armanini, F., Bain, D., Duncan, S.H., Louis, P., et al. (2020) Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations. Genome Biology, 21, 138.

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McHugh, A.J., Feehily, C., Fenelon, M.A., Gleeson, D., Hill, C. and Cotter, P.D. (2020) Tracking the dairy microbiota from farm bulk tank to skimmed milk powder. mSystems, 5.

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Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N. and Ercolini, D. (2020) Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nature Communications, 11, 2610.

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Sabater, C., Ruiz, L., Delgado, S., Ruas-Madiedo, P. and Margolles, A. (2020) Valorization of vegetable food waste and by-products through fermentation processes. Frontiers in Microbiology, 11:581997.

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Walsh, A.M., Macori, G., Kilcawley, K.N. and Cotter, P.D.(2020) Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food, 1, 500–510.

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